Washington [US]: Every human being has a genome which is complex. It is equivalent to three billion letters of code, with multiple variations within each person. It is perhaps not humanly possible to sit and analyze all that code. However, according to a research published in the journal named "Nature Machine Intelligence", Artificial Intelligence has the ability to spot things that humans may miss through billions of codings. Someday, AI-powered genome readers may even be able to predict the incidence of diseases from cancer to the common cold. Unfortunately, AI's recent popularity surge has led to a bottleneck in innovation.
"It's like the Wild West right now. Everyone's just doing whatever the hell they want," says Cold Spring Harbor Laboratory (CSHL) Assistant Professor Peter Koo. Just like Frankenstein's monster was a mix of different parts, AI researchers are constantly building new algorithms from various sources. And it's difficult to judge whether their creations will be good or bad. After all, how can scientists judge "good" and "bad" when dealing with computations that are beyond human capabilities?
That's where GOPHER, the Koo lab's newest invention, comes in. GOPHER (short for GenOmic Profile-model compreHensive EvaluatoR) is a new method that helps researchers identify the most efficient AI programs to analyze the genome. "We created a framework where you can compare the algorithms more systematically," explains Ziqi Tang, a graduate student in Koo's laboratory.
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